J4_4V9F_001

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

4V9F|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9F|1|0|C|239
4V9F|1|0|C|240
*
4V9F|1|0|G|379
4V9F|1|0|A|380
4V9F|1|0|G|381
4V9F|1|0|U|382
4V9F|1|0|A|383
4V9F|1|0|G|384
*
4V9F|1|0|C|405
4V9F|1|0|G|406
4V9F|1|0|A|407
4V9F|1|0|A|408
4V9F|1|0|U|409
4V9F|1|0|A|410
4V9F|1|0|A|411
4V9F|1|0|C|412
*
4V9F|1|0|G|428
4V9F|1|0|A|429
4V9F|1|0|A|430
4V9F|1|0|G|431

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e