J4_4V9F_008

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

4V9F|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V9F|1|0|C|1889
4V9F|1|0|U|1890
4V9F|1|0|G|1891
*
4V9F|1|0|C|1946
4V9F|1|0|G|1947
*
4V9F|1|0|C|1965
4V9F|1|0|U|1966
4V9F|1|0|U|1967
4V9F|1|0|A|1968
4V9F|1|0|A|1969
4V9F|1|0|G|1970
4V9F|1|0|G|1971
4V9F|1|0|U|1972
4V9F|1|0|A|1973
4V9F|1|0|G|1974
*
4V9F|1|0|U|2008
4V9F|1|0|G|2009
4V9F|1|0|A|2010
4V9F|1|0|A|2011
4V9F|1|0|U|2012
4V9F|1|0|G|2013

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P