J4_4V9H_004
3D structure
- PDB id
- 4V9H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.86 Å
Loop
- Sequence
- AUAG*CAGG*CCGUGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 4V9H|1|AV|U|8, 4V9H|1|AV|U|47, 4V9H|1|AV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9H_004 not in the Motif Atlas
- Homologous match to J4_4V90_004
- Geometric discrepancy: 0.1179
- The information below is about J4_4V90_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_94519.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V9H|1|AV|A|7
4V9H|1|AV|U|8
4V9H|1|AV|A|9
4V9H|1|AV|G|10
*
4V9H|1|AV|C|25
4V9H|1|AV|A|26
4V9H|1|AV|G|27
4V9H|1|AV|G|28
*
4V9H|1|AV|C|42
4V9H|1|AV|C|43
4V9H|1|AV|G|44
4V9H|1|AV|U|45
4V9H|1|AV|G|46
4V9H|1|AV|U|47
4V9H|1|AV|C|48
4V9H|1|AV|C|49
*
4V9H|1|AV|G|65
4V9H|1|AV|U|66
Current chains
- Chain AV
- PE hybrid state tRNA Phe
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S ribosomal protein S13
- Chain B6
- 50S ribosomal protein L33
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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