J4_4V9H_008

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4V9H|1|BA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9H_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0543

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V9H|1|BA|G|1310
4V9H|1|BA|G|1311
4V9H|1|BA|U|1312
4V9H|1|BA|U|1313
4V9H|1|BA|C|1314
*
4V9H|1|BA|G|1338
4V9H|1|BA|G|1339
4V9H|1|BA|U|1340
4V9H|1|BA|U|1341
4V9H|1|BA|A|1342
4V9H|1|BA|G|1343
*
4V9H|1|BA|C|1404
4V9H|1|BA|U|1405
*
4V9H|1|BA|A|1597
4V9H|1|BA|C|1598
4V9H|1|BA|C|1599
4V9H|1|BA|C|1600
4V9H|1|BA|G|1601
4V9H|1|BA|U|1602
4V9H|1|BA|A|1603
4V9H|1|BA|C|1604

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23