J4_4V9J_018

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

GUAG*CAC*GGGGUCACAG*CCGUC

Length

22 nucleotides

Bulged bases

4V9J|1|CW|U|8, 4V9J|1|CW|U|47, 4V9J|1|CW|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9J|1|CW|G|7
4V9J|1|CW|U|8
4V9J|1|CW|A|9
4V9J|1|CW|G|10
*
4V9J|1|CW|C|25
4V9J|1|CW|A|26
4V9J|1|CW|C|27
*
4V9J|1|CW|G|43
4V9J|1|CW|G|44
4V9J|1|CW|G|45
4V9J|1|CW|G|46
4V9J|1|CW|U|47
4V9J|1|CW|C|48
4V9J|1|CW|A|49
4V9J|1|CW|C|50
4V9J|1|CW|A|51
4V9J|1|CW|G|52
*
4V9J|1|CW|C|62
4V9J|1|CW|C|63
4V9J|1|CW|G|64
4V9J|1|CW|U|65
4V9J|1|CW|C|66

Current chains

Chain CW

tRNA-Met

Nearby chains

Chain CM

30S ribosomal protein S13

Chain D6

50S ribosomal protein L33

Chain DC

50S ribosomal protein L1