J4_4V9K_019

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUAG*CAC*GGGGUCA*UC

Length

16 nucleotides

Bulged bases

4V9K|1|CW|U|8, 4V9K|1|CW|U|47, 4V9K|1|CW|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9K_019 not in the Motif Atlas

Homologous match to J4_4V9K_004

Geometric discrepancy: 0.1324

The information below is about J4_4V9K_004

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

4V9K|1|CW|G|7
4V9K|1|CW|U|8
4V9K|1|CW|A|9
4V9K|1|CW|G|10
*
4V9K|1|CW|C|25
4V9K|1|CW|A|26
4V9K|1|CW|C|27
*
4V9K|1|CW|G|43
4V9K|1|CW|G|44
4V9K|1|CW|G|45
4V9K|1|CW|G|46
4V9K|1|CW|U|47
4V9K|1|CW|C|48
4V9K|1|CW|A|49
*
4V9K|1|CW|U|65
4V9K|1|CW|C|66

Current chains

Chain CW

transfer RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CM

30S ribosomal protein S13

Chain D6

50S ribosomal protein L33