J4_4V9M_022

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUCUAG

Length

20 nucleotides

Bulged bases

4V9M|1|DA|C|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9M_022 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4687

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V9M|1|DA|C|601
4V9M|1|DA|G|602
4V9M|1|DA|A|603
4V9M|1|DA|G|604
*
4V9M|1|DA|C|624
4V9M|1|DA|G|625
4V9M|1|DA|U|626
4V9M|1|DA|A|627
4V9M|1|DA|G|628
*
4V9M|1|DA|C|635
4V9M|1|DA|G|636
4V9M|1|DA|A|637
4V9M|1|DA|G|638
*
4V9M|1|DA|C|650
4V9M|1|DA|G|651
4V9M|1|DA|U|652
4V9M|1|DA|C|653
4V9M|1|DA|U|654
4V9M|1|DA|A|655
4V9M|1|DA|G|656

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15