J4_4V9N_021

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUGGA*UACAAUG*CCCAGUUCGGAUU*AUGAAGCCGGAAUC

Length

40 nucleotides

Bulged bases

4V9N|1|CA|U|1240, 4V9N|1|CA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9N|1|CA|G|941
4V9N|1|CA|G|942
4V9N|1|CA|U|943
4V9N|1|CA|G|944
4V9N|1|CA|G|945
4V9N|1|CA|A|946
*
4V9N|1|CA|U|1235
4V9N|1|CA|A|1236
4V9N|1|CA|C|1237
4V9N|1|CA|A|1238
4V9N|1|CA|A|1239
4V9N|1|CA|U|1240
4V9N|1|CA|G|1241
*
4V9N|1|CA|C|1296
4V9N|1|CA|C|1297
4V9N|1|CA|C|1298
4V9N|1|CA|A|1299
4V9N|1|CA|G|1300
4V9N|1|CA|U|1301
4V9N|1|CA|U|1302
4V9N|1|CA|C|1303
4V9N|1|CA|G|1304
4V9N|1|CA|G|1305
4V9N|1|CA|A|1306
4V9N|1|CA|U|1307
4V9N|1|CA|U|1308
*
4V9N|1|CA|A|1329
4V9N|1|CA|U|1330
4V9N|1|CA|G|1331
4V9N|1|CA|A|1332
4V9N|1|CA|A|1333
4V9N|1|CA|G|1334
4V9N|1|CA|C|1335
4V9N|1|CA|C|1336
4V9N|1|CA|G|1337
4V9N|1|CA|G|1338
4V9N|1|CA|A|1339
4V9N|1|CA|A|1340
4V9N|1|CA|U|1341
4V9N|1|CA|C|1342

Current chains

Chain CA

16S rRNA (1504-MER)

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13

Chain CU

30S ribosomal protein Thx

Chain CW

Transfer RNA; tRNA