J4_4V9O_031

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V9O|1|EA|U|653, 4V9O|1|EA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9O_031 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1158

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V9O|1|EA|C|601
4V9O|1|EA|A|602
4V9O|1|EA|A|603
4V9O|1|EA|G|604
*
4V9O|1|EA|C|624
4V9O|1|EA|G|625
4V9O|1|EA|A|626
4V9O|1|EA|A|627
4V9O|1|EA|G|628
*
4V9O|1|EA|C|635
4V9O|1|EA|G|636
4V9O|1|EA|A|637
4V9O|1|EA|G|638
*
4V9O|1|EA|C|650
4V9O|1|EA|G|651
4V9O|1|EA|U|652
4V9O|1|EA|U|653
4V9O|1|EA|A|654
4V9O|1|EA|A|655
4V9O|1|EA|G|656

Current chains

Chain EA

23S rRNA

Nearby chains

Chain E3

50S ribosomal protein L35

Chain EE

50S ribosomal protein L4

Chain EL

50S ribosomal protein L15