J4_4V9P_016

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9P_016 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0646

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9P|1|CA|G|297
4V9P|1|CA|G|298
4V9P|1|CA|A|299
4V9P|1|CA|A|300
4V9P|1|CA|G|301
*
4V9P|1|CA|C|316
4V9P|1|CA|G|317
4V9P|1|CA|C|318
4V9P|1|CA|G|319
*
4V9P|1|CA|C|323
4V9P|1|CA|A|324
4V9P|1|CA|G|325
*
4V9P|1|CA|C|337
4V9P|1|CA|G|338
4V9P|1|CA|U|339
4V9P|1|CA|A|340
4V9P|1|CA|C|341

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CU

50S ribosomal protein L24