J4_4V9P_033

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V9P|1|EA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9P_033 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0779

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V9P|1|EA|G|1310
4V9P|1|EA|G|1311
4V9P|1|EA|U|1312
4V9P|1|EA|U|1313
4V9P|1|EA|C|1314
*
4V9P|1|EA|G|1338
4V9P|1|EA|G|1339
4V9P|1|EA|U|1340
4V9P|1|EA|G|1341
4V9P|1|EA|A|1342
4V9P|1|EA|G|1343
*
4V9P|1|EA|C|1404
4V9P|1|EA|U|1405
*
4V9P|1|EA|A|1597
4V9P|1|EA|A|1598
4V9P|1|EA|U|1599
4V9P|1|EA|C|1600
4V9P|1|EA|G|1601
4V9P|1|EA|U|1602
4V9P|1|EA|A|1603
4V9P|1|EA|C|1604

Current chains

Chain EA

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L34

Chain ET

50S ribosomal protein L23