J4_4V9Q_003

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUCUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9Q_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4768

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V9Q|1|AA|C|601
4V9Q|1|AA|G|602
4V9Q|1|AA|A|603
4V9Q|1|AA|G|604
*
4V9Q|1|AA|C|624
4V9Q|1|AA|G|625
4V9Q|1|AA|U|626
4V9Q|1|AA|A|627
4V9Q|1|AA|G|628
*
4V9Q|1|AA|C|635
4V9Q|1|AA|G|636
4V9Q|1|AA|A|637
4V9Q|1|AA|G|638
*
4V9Q|1|AA|C|650
4V9Q|1|AA|G|651
4V9Q|1|AA|U|652
4V9Q|1|AA|C|653
4V9Q|1|AA|U|654
4V9Q|1|AA|A|655
4V9Q|1|AA|G|656

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L35

Chain AF

50S ribosomal protein L4

Chain AL

50S ribosomal protein L15