J4_4V9Q_018

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9Q_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0783

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9Q|1|CA|C|297
4V9Q|1|CA|G|298
4V9Q|1|CA|A|299
4V9Q|1|CA|A|300
4V9Q|1|CA|G|301
*
4V9Q|1|CA|C|316
4V9Q|1|CA|G|317
4V9Q|1|CA|C|318
4V9Q|1|CA|C|319
*
4V9Q|1|CA|G|323
4V9Q|1|CA|A|324
4V9Q|1|CA|G|325
*
4V9Q|1|CA|C|337
4V9Q|1|CA|G|338
4V9Q|1|CA|U|339
4V9Q|1|CA|A|340
4V9Q|1|CA|G|341

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L4

Chain CU

50S ribosomal protein L24