J4_4V9Q_031

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V9Q|1|DV|U|8, 4V9Q|1|DV|U|47, 4V9Q|1|DV|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9Q|1|DV|G|7
4V9Q|1|DV|U|8
4V9Q|1|DV|G|9
4V9Q|1|DV|G|10
*
4V9Q|1|DV|C|25
4V9Q|1|DV|G|26
4V9Q|1|DV|U|27
*
4V9Q|1|DV|A|43
4V9Q|1|DV|A|44
4V9Q|1|DV|G|45
4V9Q|1|DV|G|46
4V9Q|1|DV|U|47
4V9Q|1|DV|C|48
4V9Q|1|DV|G|49
*
4V9Q|1|DV|C|65
4V9Q|1|DV|C|66

Current chains

Chain DV

tRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CM

50S ribosomal protein L16

Chain CW

50S ribosomal protein L27

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DM

30S ribosomal protein S13