J4_4V9S_012

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V9S|1|BA|A|1993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9S_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0538

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4V9S|1|BA|U|1864
4V9S|1|BA|U|1865
4V9S|1|BA|G|1866
*
4V9S|1|BA|C|1927
4V9S|1|BA|G|1928
*
4V9S|1|BA|C|1946
4V9S|1|BA|C|1947
4V9S|1|BA|U|1948
4V9S|1|BA|A|1949
4V9S|1|BA|A|1950
4V9S|1|BA|G|1951
4V9S|1|BA|G|1952
4V9S|1|BA|U|1953
4V9S|1|BA|A|1954
4V9S|1|BA|G|1955
*
4V9S|1|BA|C|1989
4V9S|1|BA|G|1990
4V9S|1|BA|A|1991
4V9S|1|BA|A|1992
4V9S|1|BA|A|1993
4V9S|1|BA|A|1994

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA

Chain BD

50S Ribosomal Protein L2