J4_4V9S_018
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V9S|1|CX|U|8, 4V9S|1|CX|U|47, 4V9S|1|CX|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9S_018 not in the Motif Atlas
- Homologous match to J4_4WJ4_001
- Geometric discrepancy: 0.2133
- The information below is about J4_4WJ4_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
4V9S|1|CX|G|7
4V9S|1|CX|U|8
4V9S|1|CX|G|9
4V9S|1|CX|G|10
*
4V9S|1|CX|C|25
4V9S|1|CX|G|26
4V9S|1|CX|U|27
*
4V9S|1|CX|A|43
4V9S|1|CX|A|44
4V9S|1|CX|G|45
4V9S|1|CX|G|46
4V9S|1|CX|U|47
4V9S|1|CX|C|48
4V9S|1|CX|G|49
*
4V9S|1|CX|C|65
4V9S|1|CX|C|66
Current chains
- Chain CX
- P-site tRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CM
- 30S Ribosomal Protein S13
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S Ribosomal Protein L16
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