J4_4V9S_020

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9S_020 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0657

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9S|1|DA|C|297
4V9S|1|DA|G|298
4V9S|1|DA|A|299
4V9S|1|DA|A|300
4V9S|1|DA|G|301
*
4V9S|1|DA|C|316
4V9S|1|DA|G|317
4V9S|1|DA|C|318
4V9S|1|DA|C|319
*
4V9S|1|DA|G|323
4V9S|1|DA|A|324
4V9S|1|DA|G|325
*
4V9S|1|DA|C|337
4V9S|1|DA|G|338
4V9S|1|DA|U|339
4V9S|1|DA|A|340
4V9S|1|DA|G|341

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S Ribosomal Protein L4

Chain DY

50S Ribosomal Protein L24