J4_4W2E_002

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2E_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0886

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4W2E|1|A|C|297
4W2E|1|A|G|298
4W2E|1|A|A|299
4W2E|1|A|A|300
4W2E|1|A|G|301
*
4W2E|1|A|C|316
4W2E|1|A|G|317
4W2E|1|A|C|318
4W2E|1|A|C|319
*
4W2E|1|A|G|323
4W2E|1|A|A|324
4W2E|1|A|G|325
*
4W2E|1|A|C|337
4W2E|1|A|G|338
4W2E|1|A|U|339
4W2E|1|A|A|340
4W2E|1|A|G|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24