J4_4W2E_014
3D structure
- PDB id
- 4W2E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4W2E|1|w|4SU|8, 4W2E|1|w|U|47, 4W2E|1|w|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W2E_014 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.1909
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
4W2E|1|w|A|7
4W2E|1|w|4SU|8
4W2E|1|w|A|9
4W2E|1|w|G|10
*
4W2E|1|w|C|25
4W2E|1|w|A|26
4W2E|1|w|G|27
*
4W2E|1|w|C|43
4W2E|1|w|G|44
4W2E|1|w|U|45
4W2E|1|w|7MG|46
4W2E|1|w|U|47
4W2E|1|w|C|48
4W2E|1|w|C|49
*
4W2E|1|w|G|65
4W2E|1|w|U|66
Current chains
- Chain w
- P-site tRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L27
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S ribosomal protein L16
- Chain m
- 30S ribosomal protein S13
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