J4_4W2F_024

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2F_024 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0724

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4W2F|1|DA|C|297
4W2F|1|DA|G|298
4W2F|1|DA|A|299
4W2F|1|DA|A|300
4W2F|1|DA|G|301
*
4W2F|1|DA|C|316
4W2F|1|DA|G|317
4W2F|1|DA|C|318
4W2F|1|DA|C|319
*
4W2F|1|DA|G|323
4W2F|1|DA|A|324
4W2F|1|DA|G|325
*
4W2F|1|DA|C|337
4W2F|1|DA|G|338
4W2F|1|DA|U|339
4W2F|1|DA|A|340
4W2F|1|DA|G|341

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S Ribosomal Protein L4

Chain DY

50S Ribosomal Protein L24