J4_4W2F_026

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4W2F|1|DA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2F_026 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0604

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4W2F|1|DA|G|1310
4W2F|1|DA|G|1311
4W2F|1|DA|U|1312
4W2F|1|DA|U|1313
4W2F|1|DA|C|1314
*
4W2F|1|DA|G|1338
4W2F|1|DA|G|1339
4W2F|1|DA|U|1340
4W2F|1|DA|U|1341
4W2F|1|DA|A|1342
4W2F|1|DA|G|1343
*
4W2F|1|DA|C|1404
4W2F|1|DA|U|1405
*
4W2F|1|DA|A|1597
4W2F|1|DA|C|1598
4W2F|1|DA|C|1599
4W2F|1|DA|C|1600
4W2F|1|DA|G|1601
4W2F|1|DA|U|1602
4W2F|1|DA|A|1603
4W2F|1|DA|C|1604

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34

Chain DX

50S Ribosomal Protein L23