J4_4W2H_011

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2H_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0376

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4W2H|1|BA|G|1803
4W2H|1|BA|A|1804
4W2H|1|BA|C|1805
4W2H|1|BA|U|1806
4W2H|1|BA|G|1807
*
4W2H|1|BA|C|1819
4W2H|1|BA|A|1820
4W2H|1|BA|C|1821
4W2H|1|BA|A|1822
4W2H|1|BA|G|1823
*
4W2H|1|BA|C|1858
4W2H|1|BA|G|1859
4W2H|1|BA|A|1860
4W2H|1|BA|C|1861
*
4W2H|1|BA|G|1997
4W2H|1|BA|U|1998
4W2H|1|BA|A|1999
4W2H|1|BA|A|2000
4W2H|1|BA|C|2001

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S Ribosomal Protein L2