J4_4W2I_005
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4W2I|1|AX|4SU|8, 4W2I|1|AX|U|47, 4W2I|1|AX|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W2I_005 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.2131
- The information below is about J4_9DFC_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4W2I|1|AX|G|7
4W2I|1|AX|4SU|8
4W2I|1|AX|G|9
4W2I|1|AX|G|10
*
4W2I|1|AX|C|25
4W2I|1|AX|G|26
4W2I|1|AX|U|27
*
4W2I|1|AX|A|43
4W2I|1|AX|A|44
4W2I|1|AX|G|45
4W2I|1|AX|G|46
4W2I|1|AX|U|47
4W2I|1|AX|C|48
4W2I|1|AX|G|49
*
4W2I|1|AX|C|65
4W2I|1|AX|C|66
Current chains
- Chain AX
- E-site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S Ribosomal Protein S13
- Chain AW
- Transfer RNA; tRNA
- Chain B0
- 50S Ribosomal Protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S Ribosomal Protein L16
Coloring options: