J4_4W2I_008

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2I_008 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0442

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4W2I|1|BA|C|321
4W2I|1|BA|G|322
4W2I|1|BA|A|323
4W2I|1|BA|A|324
4W2I|1|BA|G|325
*
4W2I|1|BA|C|340
4W2I|1|BA|G|341
4W2I|1|BA|C|342
4W2I|1|BA|C|343
*
4W2I|1|BA|G|347
4W2I|1|BA|A|348
4W2I|1|BA|G|349
*
4W2I|1|BA|C|361
4W2I|1|BA|G|362
4W2I|1|BA|U|363
4W2I|1|BA|A|364
4W2I|1|BA|G|365

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BF

50S Ribosomal Protein L4

Chain BY

50S Ribosomal Protein L24