J4_4W2I_009

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4W2I|1|BA|G|1317, 4W2I|1|BA|A|1318, 4W2I|1|BA|U|1319, 4W2I|1|BA|G|1694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2I_009 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0383

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4W2I|1|BA|C|1316
4W2I|1|BA|G|1317
4W2I|1|BA|A|1318
4W2I|1|BA|U|1319
4W2I|1|BA|A|1320
4W2I|1|BA|A|1321
4W2I|1|BA|A|1322
*
4W2I|1|BA|U|1340
4W2I|1|BA|C|1341
*
4W2I|1|BA|G|1692
4W2I|1|BA|C|1693
4W2I|1|BA|G|1694
4W2I|1|BA|C|1695
*
4W2I|1|BA|G|2031
4W2I|1|BA|G|2032

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S Ribosomal Protein L32

Chain BR

50S Ribosomal Protein L17

Chain BW

50S Ribosomal Protein L22