J4_4W2I_014

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4W2I|1|BA|A|1993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2I_014 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0549

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4W2I|1|BA|U|1864
4W2I|1|BA|U|1865
4W2I|1|BA|G|1866
*
4W2I|1|BA|C|1927
4W2I|1|BA|G|1928
*
4W2I|1|BA|C|1946
4W2I|1|BA|C|1947
4W2I|1|BA|U|1948
4W2I|1|BA|A|1949
4W2I|1|BA|A|1950
4W2I|1|BA|G|1951
4W2I|1|BA|G|1952
4W2I|1|BA|U|1953
4W2I|1|BA|A|1954
4W2I|1|BA|G|1955
*
4W2I|1|BA|C|1989
4W2I|1|BA|G|1990
4W2I|1|BA|A|1991
4W2I|1|BA|A|1992
4W2I|1|BA|A|1993
4W2I|1|BA|A|1994

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA

Chain BD

50S Ribosomal Protein L2