J4_4W2I_030

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4W2I|1|DA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2I_030 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0576

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4W2I|1|DA|U|1833
4W2I|1|DA|U|1834
4W2I|1|DA|G|1835
*
4W2I|1|DA|C|1905
4W2I|1|DA|G|1906
*
4W2I|1|DA|C|1924
4W2I|1|DA|C|1925
4W2I|1|DA|U|1926
4W2I|1|DA|A|1927
4W2I|1|DA|A|1928
4W2I|1|DA|G|1929
4W2I|1|DA|G|1930
4W2I|1|DA|U|1931
4W2I|1|DA|A|1932
4W2I|1|DA|G|1933
*
4W2I|1|DA|C|1967
4W2I|1|DA|G|1968
4W2I|1|DA|A|1969
4W2I|1|DA|A|1970
4W2I|1|DA|A|1971
4W2I|1|DA|A|1972

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CX

Transfer RNA; tRNA

Chain DD

50S Ribosomal Protein L2