J4_4W4G_005
3D structure
- PDB id
- 4W4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4W4G|1|QW|U|47, 4W4G|1|QW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W4G_005 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.2286
- The information below is about J4_8VU0_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4W4G|1|QW|G|7
4W4G|1|QW|U|8
4W4G|1|QW|G|9
4W4G|1|QW|G|10
*
4W4G|1|QW|C|25
4W4G|1|QW|G|26
4W4G|1|QW|U|27
*
4W4G|1|QW|A|43
4W4G|1|QW|A|44
4W4G|1|QW|G|45
4W4G|1|QW|G|46
4W4G|1|QW|U|47
4W4G|1|QW|C|48
4W4G|1|QW|G|49
*
4W4G|1|QW|C|65
4W4G|1|QW|C|66
Current chains
- Chain QW
- tRNA fMet
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QG
- 30S ribosomal protein S7
- Chain QK
- 30S ribosomal protein S11
- Chain R6
- 50S ribosomal protein L33
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