J4_4W4G_013

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4W4G|1|RA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W4G_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0796

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4W4G|1|RA|U|1833
4W4G|1|RA|U|1834
4W4G|1|RA|G|1835
*
4W4G|1|RA|C|1905
4W4G|1|RA|G|1906
*
4W4G|1|RA|C|1924
4W4G|1|RA|C|1925
4W4G|1|RA|U|1926
4W4G|1|RA|A|1927
4W4G|1|RA|A|1928
4W4G|1|RA|G|1929
4W4G|1|RA|G|1930
4W4G|1|RA|U|1931
4W4G|1|RA|A|1932
4W4G|1|RA|G|1933
*
4W4G|1|RA|C|1967
4W4G|1|RA|G|1968
4W4G|1|RA|A|1969
4W4G|1|RA|A|1970
4W4G|1|RA|A|1971
4W4G|1|RA|A|1972

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QV

Transfer RNA; tRNA

Chain RD

50S ribosomal protein L2