J4_4W4G_022
3D structure
- PDB id
- 4W4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W4G_022 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0729
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4W4G|1|YA|C|297
4W4G|1|YA|G|298
4W4G|1|YA|A|299
4W4G|1|YA|A|300
4W4G|1|YA|G|301
*
4W4G|1|YA|C|316
4W4G|1|YA|G|317
4W4G|1|YA|C|318
4W4G|1|YA|C|319
*
4W4G|1|YA|G|323
4W4G|1|YA|A|324
4W4G|1|YA|G|325
*
4W4G|1|YA|C|337
4W4G|1|YA|G|338
4W4G|1|YA|U|339
4W4G|1|YA|A|340
4W4G|1|YA|G|341
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YF
- 50S ribosomal protein L4
- Chain YY
- 50S ribosomal protein L24
Coloring options: