J4_4WC3_002

3D structure

PDB id

4WC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tRNA-processing enzyme complex 1

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAG*CAC*GGUGUCG*CC

Length

16 nucleotides

Bulged bases

4WC3|1|B|U|8, 4WC3|1|B|U|47, 4WC3|1|B|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WC3_002 not in the Motif Atlas

Homologous match to J4_7K98_001

Geometric discrepancy: 0.4232

The information below is about J4_7K98_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

4WC3|1|B|G|7
4WC3|1|B|U|8
4WC3|1|B|A|9
4WC3|1|B|G|10
*
4WC3|1|B|C|25
4WC3|1|B|A|26
4WC3|1|B|C|27
*
4WC3|1|B|G|43
4WC3|1|B|G|44
4WC3|1|B|U|45
4WC3|1|B|G|46
4WC3|1|B|U|47
4WC3|1|B|C|48
4WC3|1|B|G|49
*
4WC3|1|B|C|65
4WC3|1|B|C|66

Current chains

Chain B

RNA 76-mer

Nearby chains

Chain A

Poly A polymerase