J4_4WC7_001

3D structure

PDB id

4WC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tRNA-processing enzyme complex 5

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAG*CACUG*CAGGUGUCG*CC

Length

20 nucleotides

Bulged bases

4WC7|1|B|U|8, 4WC7|1|B|U|47, 4WC7|1|B|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WC7_001 not in the Motif Atlas

Homologous match to J4_5E81_029

Geometric discrepancy: 0.5989

The information below is about J4_5E81_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WC7|1|B|G|7
4WC7|1|B|U|8
4WC7|1|B|A|9
4WC7|1|B|G|10
*
4WC7|1|B|C|25
4WC7|1|B|A|26
4WC7|1|B|C|27
4WC7|1|B|U|28
4WC7|1|B|G|29
*
4WC7|1|B|C|41
4WC7|1|B|A|42
4WC7|1|B|G|43
4WC7|1|B|G|44
4WC7|1|B|U|45
4WC7|1|B|G|46
4WC7|1|B|U|47
4WC7|1|B|C|48
4WC7|1|B|G|49
*
4WC7|1|B|C|65
4WC7|1|B|C|66

Current chains

Chain B

RNA (75-MER)

Nearby chains

Chain A

Poly A polymerase