J4_4WCE_004

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

4WCE|1|X|G|1309, 4WCE|1|X|A|1310, 4WCE|1|X|A|1312, 4WCE|1|X|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WCE_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.0634

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WCE|1|X|C|1308
4WCE|1|X|G|1309
4WCE|1|X|A|1310
4WCE|1|X|A|1311
4WCE|1|X|A|1312
4WCE|1|X|G|1313
*
4WCE|1|X|C|1331
4WCE|1|X|C|1332
*
4WCE|1|X|G|1689
4WCE|1|X|A|1690
4WCE|1|X|G|1691
4WCE|1|X|C|1692
*
4WCE|1|X|G|2036
4WCE|1|X|G|2037

Current chains

Chain X

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32