J4_4WCE_009

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WCE_009 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.0637

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WCE|1|X|G|2670
4WCE|1|X|A|2671
4WCE|1|X|G|2672
4WCE|1|X|C|2673
*
4WCE|1|X|G|2701
4WCE|1|X|A|2702
4WCE|1|X|C|2703
*
4WCE|1|X|G|2758
4WCE|1|X|G|2759
4WCE|1|X|A|2760
4WCE|1|X|C|2761
4WCE|1|X|G|2762
*
4WCE|1|X|C|2796
4WCE|1|X|C|2797
4WCE|1|X|C|2798

Current chains

Chain X

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14