J4_4WF1_005

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WF1_005 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.042

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4WF1|1|BA|G|297
4WF1|1|BA|G|298
4WF1|1|BA|A|299
4WF1|1|BA|A|300
4WF1|1|BA|G|301
*
4WF1|1|BA|C|316
4WF1|1|BA|G|317
4WF1|1|BA|C|318
4WF1|1|BA|G|319
*
4WF1|1|BA|C|323
4WF1|1|BA|A|324
4WF1|1|BA|G|325
*
4WF1|1|BA|C|337
4WF1|1|BA|G|338
4WF1|1|BA|U|339
4WF1|1|BA|A|340
4WF1|1|BA|C|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24