J4_4WF1_025

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4WF1|1|DA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WF1_025 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1025

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WF1|1|DA|C|1833
4WF1|1|DA|U|1834
4WF1|1|DA|G|1835
*
4WF1|1|DA|C|1905
4WF1|1|DA|G|1906
*
4WF1|1|DA|C|1924
4WF1|1|DA|C|1925
4WF1|1|DA|U|1926
4WF1|1|DA|A|1927
4WF1|1|DA|A|1928
4WF1|1|DA|G|1929
4WF1|1|DA|G|1930
4WF1|1|DA|U|1931
4WF1|1|DA|A|1932
4WF1|1|DA|G|1933
*
4WF1|1|DA|C|1967
4WF1|1|DA|G|1968
4WF1|1|DA|A|1969
4WF1|1|DA|A|1970
4WF1|1|DA|U|1971
4WF1|1|DA|G|1972

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2