J4_4WF9_003

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CAAG*CGUAG*CGAGU*GCGUUUAG

Length

22 nucleotides

Bulged bases

4WF9|1|X|U|698, 4WF9|1|X|U|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4WF9|1|X|C|644
4WF9|1|X|A|645
4WF9|1|X|A|646
4WF9|1|X|G|647
*
4WF9|1|X|C|669
4WF9|1|X|G|670
4WF9|1|X|U|671
4WF9|1|X|A|672
4WF9|1|X|G|673
*
4WF9|1|X|C|680
4WF9|1|X|G|681
4WF9|1|X|A|682
4WF9|1|X|G|683
4WF9|1|X|U|684
*
4WF9|1|X|G|694
4WF9|1|X|C|695
4WF9|1|X|G|696
4WF9|1|X|U|697
4WF9|1|X|U|698
4WF9|1|X|U|699
4WF9|1|X|A|700
4WF9|1|X|G|701

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15