J4_4WF9_005

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

4WF9|1|X|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WF9|1|X|G|1347
4WF9|1|X|U|1348
4WF9|1|X|U|1349
4WF9|1|X|U|1350
4WF9|1|X|C|1351
*
4WF9|1|X|G|1375
4WF9|1|X|G|1376
4WF9|1|X|U|1377
4WF9|1|X|U|1378
4WF9|1|X|A|1379
4WF9|1|X|G|1380
*
4WF9|1|X|C|1441
4WF9|1|X|C|1442
*
4WF9|1|X|G|1641
4WF9|1|X|C|1642
4WF9|1|X|C|1643
4WF9|1|X|C|1644
4WF9|1|X|G|1645
4WF9|1|X|U|1646
4WF9|1|X|A|1647
4WF9|1|X|C|1648

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23