J4_4WFA_006

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

4WFA|1|X|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFA_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0871

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WFA|1|X|U|1350
4WFA|1|X|C|1351
*
4WFA|1|X|G|1375
4WFA|1|X|G|1376
4WFA|1|X|U|1377
4WFA|1|X|U|1378
4WFA|1|X|A|1379
4WFA|1|X|G|1380
*
4WFA|1|X|C|1441
4WFA|1|X|C|1442
*
4WFA|1|X|G|1641
4WFA|1|X|C|1642
4WFA|1|X|C|1643
4WFA|1|X|C|1644
4WFA|1|X|G|1645
4WFA|1|X|U|1646
4WFA|1|X|A|1647

Current chains

Chain X

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L23