J4_4WFB_002

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFB_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.0612

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4WFB|1|X|C|340
4WFB|1|X|G|341
4WFB|1|X|A|342
4WFB|1|X|A|343
4WFB|1|X|U|344
*
4WFB|1|X|A|359
4WFB|1|X|A|360
4WFB|1|X|U|361
4WFB|1|X|C|362
*
4WFB|1|X|G|366
4WFB|1|X|A|367
4WFB|1|X|A|368
*
4WFB|1|X|U|380
4WFB|1|X|G|381
4WFB|1|X|U|382
4WFB|1|X|A|383
4WFB|1|X|G|384

Current chains

Chain X

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24