J4_4WFB_004

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

4WFB|1|X|G|1309, 4WFB|1|X|A|1310, 4WFB|1|X|A|1312, 4WFB|1|X|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFB_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.3248

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WFB|1|X|C|1308
4WFB|1|X|G|1309
4WFB|1|X|A|1310
4WFB|1|X|A|1311
4WFB|1|X|A|1312
4WFB|1|X|G|1313
*
4WFB|1|X|C|1331
4WFB|1|X|C|1332
*
4WFB|1|X|G|1689
4WFB|1|X|A|1690
4WFB|1|X|G|1691
4WFB|1|X|C|1692
*
4WFB|1|X|G|2036
4WFB|1|X|G|2037

Current chains

Chain X

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32