J4_4WFB_006

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

4WFB|1|X|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFB_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.071

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WFB|1|X|U|1350
4WFB|1|X|C|1351
*
4WFB|1|X|G|1375
4WFB|1|X|G|1376
4WFB|1|X|U|1377
4WFB|1|X|U|1378
4WFB|1|X|A|1379
4WFB|1|X|G|1380
*
4WFB|1|X|C|1441
4WFB|1|X|C|1442
*
4WFB|1|X|G|1641
4WFB|1|X|C|1642
4WFB|1|X|C|1643
4WFB|1|X|C|1644
4WFB|1|X|G|1645
4WFB|1|X|U|1646
4WFB|1|X|A|1647

Current chains

Chain X

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L23