3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
4WOI|1|AA|C|576, 4WOI|1|AA|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4WOI_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0575
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4WOI|1|AA|G|575
4WOI|1|AA|C|576
4WOI|1|AA|G|577
*
4WOI|1|AA|C|764
4WOI|1|AA|G|765
4WOI|1|AA|A|766
4WOI|1|AA|A|767
4WOI|1|AA|A|768
4WOI|1|AA|G|769
*
4WOI|1|AA|C|810
4WOI|1|AA|C|811
4WOI|1|AA|G|812
4WOI|1|AA|U|813
4WOI|1|AA|A|814
4WOI|1|AA|A|815
4WOI|1|AA|A|816
4WOI|1|AA|C|817
4WOI|1|AA|G|818
4WOI|1|AA|A|819
4WOI|1|AA|U|820
4WOI|1|AA|G|821
*
4WOI|1|AA|C|879
4WOI|1|AA|C|880

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AK
30S ribosomal protein S11
Chain AL
30S ribosomal protein S12
Chain AO
30S ribosomal protein S15
Chain AQ
30S ribosomal protein S17
Chain AU
30S ribosomal protein S21
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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