J4_4WOI_013

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4WOI|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WOI_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1292

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WOI|1|BA|C|1833
4WOI|1|BA|U|1834
4WOI|1|BA|G|1835
*
4WOI|1|BA|C|1905
4WOI|1|BA|G|1906
*
4WOI|1|BA|C|1924
4WOI|1|BA|C|1925
4WOI|1|BA|U|1926
4WOI|1|BA|A|1927
4WOI|1|BA|A|1928
4WOI|1|BA|G|1929
4WOI|1|BA|G|1930
4WOI|1|BA|U|1931
4WOI|1|BA|A|1932
4WOI|1|BA|G|1933
*
4WOI|1|BA|C|1967
4WOI|1|BA|G|1968
4WOI|1|BA|A|1969
4WOI|1|BA|A|1970
4WOI|1|BA|U|1971
4WOI|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2