J4_4WOI_017

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WOI_017 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0558

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4WOI|1|CA|G|297
4WOI|1|CA|G|298
4WOI|1|CA|A|299
4WOI|1|CA|A|300
4WOI|1|CA|G|301
*
4WOI|1|CA|C|316
4WOI|1|CA|G|317
4WOI|1|CA|C|318
4WOI|1|CA|G|319
*
4WOI|1|CA|C|323
4WOI|1|CA|A|324
4WOI|1|CA|G|325
*
4WOI|1|CA|C|337
4WOI|1|CA|G|338
4WOI|1|CA|U|339
4WOI|1|CA|A|340
4WOI|1|CA|C|341

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CU

50S ribosomal protein L24