J4_4WOI_018

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4WOI|1|CA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WOI_018 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1316

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4WOI|1|CA|C|601
4WOI|1|CA|A|602
4WOI|1|CA|A|603
4WOI|1|CA|G|604
*
4WOI|1|CA|C|624
4WOI|1|CA|G|625
4WOI|1|CA|A|626
4WOI|1|CA|A|627
4WOI|1|CA|G|628
*
4WOI|1|CA|C|635
4WOI|1|CA|G|636
4WOI|1|CA|A|637
4WOI|1|CA|G|638
*
4WOI|1|CA|C|650
4WOI|1|CA|G|651
4WOI|1|CA|U|652
4WOI|1|CA|U|653
4WOI|1|CA|A|654
4WOI|1|CA|A|655
4WOI|1|CA|G|656

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C3

50S ribosomal protein L35

Chain CE

50S ribosomal protein L4

Chain CL

50S ribosomal protein L15