J4_4WOI_029
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4WOI|1|DA|C|576, 4WOI|1|DA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WOI_029 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0491
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4WOI|1|DA|G|575
4WOI|1|DA|C|576
4WOI|1|DA|G|577
*
4WOI|1|DA|C|764
4WOI|1|DA|G|765
4WOI|1|DA|A|766
4WOI|1|DA|A|767
4WOI|1|DA|A|768
4WOI|1|DA|G|769
*
4WOI|1|DA|C|810
4WOI|1|DA|C|811
4WOI|1|DA|G|812
4WOI|1|DA|U|813
4WOI|1|DA|A|814
4WOI|1|DA|A|815
4WOI|1|DA|A|816
4WOI|1|DA|C|817
4WOI|1|DA|G|818
4WOI|1|DA|A|819
4WOI|1|DA|U|820
4WOI|1|DA|G|821
*
4WOI|1|DA|C|879
4WOI|1|DA|C|880
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DH
- 30S ribosomal protein S8
- Chain DL
- 30S ribosomal protein S12
- Chain DO
- 30S ribosomal protein S15
- Chain DQ
- 30S ribosomal protein S17
- Chain DU
- 30S ribosomal protein S21
Coloring options: