J4_4WPO_007

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_007 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0464

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WPO|1|AA|G|1803
4WPO|1|AA|A|1804
4WPO|1|AA|C|1805
4WPO|1|AA|U|1806
4WPO|1|AA|G|1807
*
4WPO|1|AA|C|1819
4WPO|1|AA|A|1820
4WPO|1|AA|C|1821
4WPO|1|AA|A|1822
4WPO|1|AA|G|1823
*
4WPO|1|AA|C|1858
4WPO|1|AA|G|1859
4WPO|1|AA|A|1860
4WPO|1|AA|C|1861
*
4WPO|1|AA|G|1997
4WPO|1|AA|U|1998
4WPO|1|AA|A|1999
4WPO|1|AA|A|2000
4WPO|1|AA|C|2001

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA