J4_4WPO_008

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4WPO|1|AA|A|1993

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0572

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4WPO|1|AA|U|1864
4WPO|1|AA|U|1865
4WPO|1|AA|G|1866
*
4WPO|1|AA|C|1927
4WPO|1|AA|G|1928
*
4WPO|1|AA|C|1946
4WPO|1|AA|C|1947
4WPO|1|AA|U|1948
4WPO|1|AA|A|1949
4WPO|1|AA|A|1950
4WPO|1|AA|G|1951
4WPO|1|AA|G|1952
4WPO|1|AA|U|1953
4WPO|1|AA|A|1954
4WPO|1|AA|G|1955
*
4WPO|1|AA|C|1989
4WPO|1|AA|G|1990
4WPO|1|AA|A|1991
4WPO|1|AA|A|1992
4WPO|1|AA|A|1993
4WPO|1|AA|A|1994

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BX

Transfer RNA; tRNA