J4_4WPO_016
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGA(4SU)AGC*GCAG*CGU(7MG)UCC*GUCC
- Length
- 22 nucleotides
- Bulged bases
- 4WPO|1|BY|4SU|8, 4WPO|1|BY|U|47, 4WPO|1|BY|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4WPO|1|BY|G|5
4WPO|1|BY|G|6
4WPO|1|BY|A|7
4WPO|1|BY|4SU|8
4WPO|1|BY|A|9
4WPO|1|BY|G|10
4WPO|1|BY|C|11
*
4WPO|1|BY|G|24
4WPO|1|BY|C|25
4WPO|1|BY|A|26
4WPO|1|BY|G|27
*
4WPO|1|BY|C|43
4WPO|1|BY|G|44
4WPO|1|BY|U|45
4WPO|1|BY|7MG|46
4WPO|1|BY|U|47
4WPO|1|BY|C|48
4WPO|1|BY|C|49
*
4WPO|1|BY|G|65
4WPO|1|BY|U|66
4WPO|1|BY|C|67
4WPO|1|BY|C|68
Current chains
- Chain BY
- E-site tRNA
Nearby chains
- Chain A6
- 50S ribosomal protein L33
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 30S ribosomal protein S7
Coloring options: